Elsewhere, Ryu and Nina ran into trouble with a Fou Empire captain named Rasso and couldn't get the needed spare parts in the end. While escaping the Fou soldiers, they travel to a town blighted by an evil miasma known as "hex" to get back to Cray, where they meet Ershin, a mysterious robot-like armor who leads them through the poisoned side of town. Re-uniting with Cray, the team makes their way west to gather more information. The story shifts back to Fou-Lu, who has awakened after his ordeal with Yohm and finds himself in the care of a man named Bunyan. After recovering enough, Fou-Lu departs down the mountain only to find Yohm and his soldiers blocking the path. After a struggle, Fou-Lu is forced to flee by transforming into a dragon and flying away, declaring that he must find his "other half", Ryu, and re-unite with him before the Empire finds him first. Yohm summoned another creature to chase and strike Fou-Lu down. It succeeded and Fou-Lu crashes into the forest below.
By this time, Ryu and his friends have arrived at the border town of Kyojin, where they meet Captain Rasso again who attempts to block them from entering the Causeway's gates. Quickly escaping past the guards in Fou Empire's contient, the team make their way north where they meet Yuna, an Imperial scientist who knows of Elina. He claimed that she was here but no longer was. The soldiers then captures and returns them to the Eastern Lands with accusations of breaking the pre-war peace treaty by trespassing in their lands. The group is detained in the town of Ludia and Cray is set to stand trial on their behalf. The group tries to help by "lessing the evidence" against Cray but to no effect with the judge. With no other choice Ryu, Nina and Ershin break him out of captivity with the help of Scias, a tall, dog-like mercenary who joins their cause. Determined to clear their names and find Elina, they travel past a swamp and through a volcano to arrive in Wyndia, where after an audience with Nina's father, the king, the group continues west. After seeking the Wind Dragon at the top of an ancient temple and brought to an ancient summoners' village, the group learns of Ryu's heritage, why the Empire is after Ryu, and the danger he would be in should he and Fou-Lu ever meet. They also learned that Ershin was carrying an Endless' spirit named Deis. While the group learns all this, Captain Rasso tracked Ryu to the summoners' village and killed most of the villagers. They then meet Ursula, granddaughter of a high-ranking Fou Empire official and was against Rasso's savage methods. After attacking the villagers, Captain Rasso pulls out his trump card against Ryu. Ryu goes berserk and incinerates all the soldiers and Rasso and almost kills Ursula too but Nina manages to calm Ryu down. Before leaving for Kyojin again along the western border, Ursula joins the group to keep an eye on them. Learning that the Causeway broke down after their initial visit, they find that they need a ship in order to proceed with their journey.
Ryu and his team travel to the Emperor's pagoda to stop him, and find Ursula's adopted grandfather, General Rhuh, holding off several monsters and A-Tur charging the palace area. Dying in the struggle, Ursula's grandfather tells his daughter to stop Fou-Lu with her new friends, and restore the empire to its former glory. She agrees, and the group makes their way to the palace's inner sanctum, where Ryu personally confronts Fou-Lu and questions his motivation to destroy humanity after they have done so much for him in the past, recalling and comparing their memories. After an intense battle, Fou-Lu finally understands Ryu's defense and merges with Ryu to become the complete Yorae Dragon God. With the remaining dragon gods of the world deciding to now leave life in humanity's hands, they remove their presence from the planet. With Ryu's godhood now gone, he rejoins the group as a mortal and they leave the palace together to return home.
There is an alternative ending of the story where Fou-Lu absorbs Ryu, making him the dominant half where he then plans to end all life as the ultimate god, starting by killing Ryu's friends.
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